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Journal of Bioscience and Agriculture Research 
RESEARCH ARTICLE: 
Appearance of the non-indigenous mtDNA haplotypes of Rhynchocypris lagowskii in Tohoku, Japan
 
C. M. M. Hassan, Takanori Ishikawa, Singo Seki and A. Mahmuda
Laboratory of Aquatic Ecology, Faculty of Agriculture, Kochi University, B-200 Nankoku, Kochi 783-8502, Japan

​Received: 02.05.17, Revised: 04.06.17, Available online: 14 June 2017.​
J. Bios. Agric. Res. | Volume 14, Issue 01, pp. 1157-1164 
​Crossref: https://doi.org/10.18801/jbar.140117.142
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Title: Appearance of the non-indigenous mtDNA haplotypes of Rhynchocypris lagowskii in Tohoku, Japan
Abstract: Classification of fresh water fish cyprinidae is hampered by complexity or lack of morphological diversity. In this study we analyse besed on mtDNA sequences were undertaken to clarify phylogenetic relationship Aburahaya (Rhynchocypris lagowskii) among various site in Tohoku, Japan. Evolutionary rate in cytochrome b gene (Cyt-b) region we examined. To assess genetic structure within these populations we analyzed using statistical parsimony networks and relationships between the populations were examined using a neighbor-joining (NJ) method. Three major geographical groups are found in this study. The most parsimonious network of mtDNA haplotype of aburahaya 19 localities, estimated using the TCS algorithm. In this network also showed three geographical groups. Haplotype 1-32 is one group, haplotype 33-36 is group 2, haplotype 37-53 is group 3 and 54 is out group.
Key Words: Population genetics, mtDNA, Cyprinide, Aburahaya, Geographic groups and Haplotype network
HOW TO CITE THIS ARTICLE? ​​
APA (American Psychological Association)
Hassan, C. M. M., Ishikawa, T., Seki, S. and Mahmuda, A. (2017). Appearance of the non-indigenous mtDNA haplotypes of Rhynchocypris lagowskii in Tohoku, Japan. Journal of Bioscience and Agriculture Research,14(01),1157-1164.​
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MLA (Modern Language Association) 
Hassan, C. M. M., Ishikawa, T., Seki, S. and Mahmuda, A. “Appearance of the non-indigenous mtDNA haplotypes of Rhynchocypris lagowskii in Tohoku, Japan”. Journal of Bioscience and Agriculture Research, 14.01(2017), 1157-1164.
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Chicago and orTurabian
Hassan, C. M. M., Ishikawa, T., Seki, S. and Mahmuda, A. “Appearance of the non-indigenous mtDNA haplotypes of Rhynchocypris lagowskii in Tohoku, Japan”. Journal of Bioscience and Agriculture Research, 14. no. 01(2017), 1157-1164.
  1. Asahida, T., Kobayashi, T., Saitoh, K. and Nakayama, I. (1996). Tissue preservation and total DNA extraction from fish stored at ambient temperature using buffers containing high concentration of urea. Fisheries Science, 62(5), 727-730.
  2. Hassan, C.M.M., Ishikawa, T., SEKI, S. and Mahmuda, A. (2015). Genetic population Structure of the Aburahaya (Rhynchocypris lagowskii) Based on Mitochondrial DNA Sequence. World Applied Science Journal, 33(7), 1079-1088.
  3. Irwin, D. M., Kocher, T. D. and Wilson, A. C. (1991). Evolution of the Cytochrome b of Mammals. J. Mol. Evol. 32, 128–144. https://doi.org/10.1007/BF02515385; PMid:1901092
  4. Kuwashiro, I. (1959). Submarine topography of Japanese Inland Sea Setonaikai. Geogr Rev Jpn, 32, 24-34. https://doi.org/10.4157/grj.32.24
  5. Maliouchenko, O., Palme, A. E., Buonamici, A., Vendramin, G. G. and Lascoux, M. (2007). Comparative phylogeography and population structure of European Betula species, with particular focus on B. pendula and B. pubescens. J. Biogeogr. 34, 1601–1610.​ https://doi.org/10.1111/j.1365-2699.2007.01729.x
  6. Matsuda, M., Yonekawa, H., Hamaguchi, S. and Sakaizumi, M. (1997). Geographic variation and diversity of the mitochondrial DNA of the medaka, Oryzias latipes, as determined by restriction endonuclease analysis. Zool. Sci. 14, 517-526. https://doi.org/10.2108/zsj.14.517
  7. Ota, Y., Naruse, T., Tanaka, S. and Ikada, A. (2004). Regional geomorophology of the Japanese Islands, vol 6. Geomorphology of Kinki, Chugoku and Shikoku. University of Tokyo press, Tokyo. https://doi.org/10.1111/j.1365-2699.2010.02462.x
  8. Saeki, I., Dick, C. W., Barnes, B. V. and Murakami, N. (2011). Comparative phylogeography of red (Acer rubrum L.) and silver maple (Acer saccharinum L.): Impacts of habitat specialization, hybridization and glacial history. J. Biogeogr. 38, 992–1005.
  9. Sakai, H., Saitoh, T., Takeuchi, M., Sugiyama, H. and Katsura, K. (2007). Cyprinid inter- generic hybridization between Tribolodon sachalinensis and Rhynohocypris lagowskii in Tohoku District. J. National Fisherise Univ. 55(2), 45-52.
  10. Sasaki, T., Kartavtsev, Y. P., Chiba, S. N., Uematsu, T., Sviridov, V. V. and Hanzawa, N. (2007). Genetic divergence and phylogenetic independence of Far Eastern species in subfamily Leuciscinae (Pisces: Cyprinidae) inferred from mitochondrial DNA analyses. Genes & genetic systems, 82(4), 329-340. https://doi.org/10.1266/ggs.82.329
  11. Shimizu, A., Uchida, K., Udagawa, M., Ohkubo, M., Ito, H., Yamamoto, S. and Takasawa, T. (2008). Multiple spawning of amphidromous type ayu Plecoglossus altivelis in a large river, Mogami River System. Fisheries science, 74, 1283-1289. https://doi.org/10.1111/j.1444-2906.2008.01653.x
  12. Sugahara, K., Kaneko, Y., Ito, S., Yamanaka, K., Sakio, H. and Hoshizaki, K. (2011). Phylogeography of Japanese horse chestnut (Aesculus turbinata) in the Japanese archipelago based on chloroplast DNA haplotypes. J. Plant Res. 124, 75–83.​ https://doi.org/10.1007/s10265-010-0356-z; PMid:20549293
  13. Suzuki, M. (2016). Iwate- ken Sanriku Engan wo nagareru shoukasen ni seisokusura tansuigyoruisou. J. Policy Studies, 17(2), 197-208 (in Japanses).
  14. Takehana, Y., Nagi, N., Matsuda, M., Tsuchiya, K. and Sakizumi, M. (2003). Geographic variation and diversity of the cyto-chrome b gene in Japanese wild populations of medaka, Oryzias latipes. Zool Sci. 20,1279-1291. https://doi.org/10.2108/zsj.20.1279; PMid:14569151
  15. Templeton, A. R., Crandall, K. A. and Sing C. F. (1992). A cladistic analysis of phenotypepic associations with haplotype inferred from restriction endonuclease mapping and DNA sequence data. Cladogram estimation. Genetics, 132, 619-633.
  16. Toyama, H. and Yahara, T. (2009). Comparative phylogeography of two closely related Viola species occurring in contrasting habitats in the Japanese archipelago. J. Plant Res. 122, 389–401. https://doi.org/10.1007/s10265-009-0235-7; PMid:19399576
  17. Carson, H. L. (1990). Increased genetic variance after a population bottleneck. Trends Ecol. Evol. 7, 228–230.​ https://doi.org/10.1016/0169-5347(90)90137-3
  18. Cooke, S. J, Suski, C. D., Arlinghaus, R. and Danylchuk, A. J. (2013). Voluntry institutions and behaviors as alternatives to formal regulations in recreational fisheries management. Fish and Fisheries, 14, 439-457. https://doi.org/10.1111/j.1467-2979.2012.00477.x
  19. Xu, T. T., Abbott, R. J., Milne, R. I., Mao, K. S., Du, F. K., Wu, G., Ciren, Z., Miehe, G. and Liu, J. (2010). Phylogeography and allopatric divergence of cypress species (Cupressus L.) in the Qinghai–Tibetan Plateau and adjacent regions. BMC Evol. Biol. 10, 194.​ https://doi.org/10.1186/1471-2148-10-194; PMid:20569425 PMCid:PMC3020627
  20. Carson, H. L. (1990). Increased genetic variance after a population bottleneck. Trends Ecol. Evol. 7, 228–230.​ https://doi.org/10.1016/0169-5347(90)90137-3
  21. Cooke, S. J, Suski, C. D., Arlinghaus, R. and Danylchuk, A. J. (2013). Voluntry institutions and behaviors as alternatives to formal regulations in recreational fisheries management. Fish and Fisheries, 14, 439-457. https://doi.org/10.1111/j.1467-2979.2012.00477.x
  22. Xu, T. T., Abbott, R. J., Milne, R. I., Mao, K. S., Du, F. K., Wu, G., Ciren, Z., Miehe, G. and Liu, J. (2010). Phylogeography and allopatric divergence of cypress species (Cupressus L.) in the Qinghai–Tibetan Plateau and adjacent regions. BMC Evol. Biol. 10, 194.​ https://doi.org/10.1186/1471-2148-10-194; PMid:20569425 PMCid:PMC3020627
  23. Carson, H. L. (1990). Increased genetic variance after a population bottleneck. Trends Ecol. Evol. 7, 228–230.​ https://doi.org/10.1016/0169-5347(90)90137-3
  24. Cooke, S. J, Suski, C. D., Arlinghaus, R. and Danylchuk, A. J. (2013). Voluntry institutions and behaviors as alternatives to formal regulations in recreational fisheries management. Fish and Fisheries, 14, 439-457. https://doi.org/10.1111/j.1467-2979.2012.00477.x
  25. Xu, T. T., Abbott, R. J., Milne, R. I., Mao, K. S., Du, F. K., Wu, G., Ciren, Z., Miehe, G. and Liu, J. (2010). Phylogeography and allopatric divergence of cypress species (Cupressus L.) in the Qinghai–Tibetan Plateau and adjacent regions. BMC Evol. Biol. 10, 194.​ https://doi.org/10.1186/1471-2148-10-194; PMid:20569425 PMCid:PMC3020627
  26. Lee, S. and Maki, M. (2013). Comparative phylogeographic study of Hosta sieboldiana and Hosta albomarginata (Asparagaceae) in Japan. Ecol. Evol. 3(14), 4767-4785. https://doi.org/10.1002/ece3.838; PMid:24363903 PMCid:PMC3867910
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