Journal of Bioscience and Agriculture Research |
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RESEARCH ARTICLE:
Appearance of the non-indigenous mtDNA haplotypes of Rhynchocypris lagowskii in Tohoku, Japan
C. M. M. Hassan, Takanori Ishikawa, Singo Seki and A. Mahmuda
Laboratory of Aquatic Ecology, Faculty of Agriculture, Kochi University, B-200 Nankoku, Kochi 783-8502, Japan.
Received: 02.05.17, Revised: 04.06.17, Available online: 14 June 2017.
J. Bios. Agric. Res. | Volume 14, Issue 01, pp. 1157-1164
Crossref: https://doi.org/10.18801/jbar.140117.142
Appearance of the non-indigenous mtDNA haplotypes of Rhynchocypris lagowskii in Tohoku, Japan
C. M. M. Hassan, Takanori Ishikawa, Singo Seki and A. Mahmuda
Laboratory of Aquatic Ecology, Faculty of Agriculture, Kochi University, B-200 Nankoku, Kochi 783-8502, Japan.
Received: 02.05.17, Revised: 04.06.17, Available online: 14 June 2017.
J. Bios. Agric. Res. | Volume 14, Issue 01, pp. 1157-1164
Crossref: https://doi.org/10.18801/jbar.140117.142
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Title: Appearance of the non-indigenous mtDNA haplotypes of Rhynchocypris lagowskii in Tohoku, Japan
Abstract: Classification of fresh water fish cyprinidae is hampered by complexity or lack of morphological diversity. In this study we analyse besed on mtDNA sequences were undertaken to clarify phylogenetic relationship Aburahaya (Rhynchocypris lagowskii) among various site in Tohoku, Japan. Evolutionary rate in cytochrome b gene (Cyt-b) region we examined. To assess genetic structure within these populations we analyzed using statistical parsimony networks and relationships between the populations were examined using a neighbor-joining (NJ) method. Three major geographical groups are found in this study. The most parsimonious network of mtDNA haplotype of aburahaya 19 localities, estimated using the TCS algorithm. In this network also showed three geographical groups. Haplotype 1-32 is one group, haplotype 33-36 is group 2, haplotype 37-53 is group 3 and 54 is out group.
Key Words: Population genetics, mtDNA, Cyprinide, Aburahaya, Geographic groups and Haplotype network
Abstract: Classification of fresh water fish cyprinidae is hampered by complexity or lack of morphological diversity. In this study we analyse besed on mtDNA sequences were undertaken to clarify phylogenetic relationship Aburahaya (Rhynchocypris lagowskii) among various site in Tohoku, Japan. Evolutionary rate in cytochrome b gene (Cyt-b) region we examined. To assess genetic structure within these populations we analyzed using statistical parsimony networks and relationships between the populations were examined using a neighbor-joining (NJ) method. Three major geographical groups are found in this study. The most parsimonious network of mtDNA haplotype of aburahaya 19 localities, estimated using the TCS algorithm. In this network also showed three geographical groups. Haplotype 1-32 is one group, haplotype 33-36 is group 2, haplotype 37-53 is group 3 and 54 is out group.
Key Words: Population genetics, mtDNA, Cyprinide, Aburahaya, Geographic groups and Haplotype network
HOW TO CITE THIS ARTICLE?
APA (American Psychological Association)
Hassan, C. M. M., Ishikawa, T., Seki, S. and Mahmuda, A. (2017). Appearance of the non-indigenous mtDNA haplotypes of Rhynchocypris lagowskii in Tohoku, Japan. Journal of Bioscience and Agriculture Research,14(01),1157-1164.
MLA (Modern Language Association)
Hassan, C. M. M., Ishikawa, T., Seki, S. and Mahmuda, A. “Appearance of the non-indigenous mtDNA haplotypes of Rhynchocypris lagowskii in Tohoku, Japan”. Journal of Bioscience and Agriculture Research, 14.01(2017), 1157-1164.
Chicago and orTurabian
Hassan, C. M. M., Ishikawa, T., Seki, S. and Mahmuda, A. “Appearance of the non-indigenous mtDNA haplotypes of Rhynchocypris lagowskii in Tohoku, Japan”. Journal of Bioscience and Agriculture Research, 14. no. 01(2017), 1157-1164.
APA (American Psychological Association)
Hassan, C. M. M., Ishikawa, T., Seki, S. and Mahmuda, A. (2017). Appearance of the non-indigenous mtDNA haplotypes of Rhynchocypris lagowskii in Tohoku, Japan. Journal of Bioscience and Agriculture Research,14(01),1157-1164.
MLA (Modern Language Association)
Hassan, C. M. M., Ishikawa, T., Seki, S. and Mahmuda, A. “Appearance of the non-indigenous mtDNA haplotypes of Rhynchocypris lagowskii in Tohoku, Japan”. Journal of Bioscience and Agriculture Research, 14.01(2017), 1157-1164.
Chicago and orTurabian
Hassan, C. M. M., Ishikawa, T., Seki, S. and Mahmuda, A. “Appearance of the non-indigenous mtDNA haplotypes of Rhynchocypris lagowskii in Tohoku, Japan”. Journal of Bioscience and Agriculture Research, 14. no. 01(2017), 1157-1164.
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